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ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA WITH 5- METHYLCYSTOSINE MODIFICATION
DOI:10.2210/pdb4c63/pdb   NDB ID: NA2707
4C63
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 7379.20
    Molecule: 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*5CMP*GP*CP*GP)-3'
    Polymer: 1 Type: dna Length: 12
    Chains: A, B
    Details: 5-METHYL CYTOSINE AT POSITION C9 STRAND A AND C21 STRAND B, DICKERSON-DREW SEQUENCE DODECAMER
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4C5X  ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA WITH 5-HYDROXYMETHYL-CYTOSINE MODIFICATION 
    4C64  ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5CM
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    5CM C10 H16 N3 O7 P DC dnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2707
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Mcdonough, M.,  El-Sagheer, A.H.,  Brown, T.,  Schofield, C.J.

    Deposition:   2013-09-17
    Release:   2013-10-02
    Last Modified (REVDAT):   2014-05-07
     
  •   Revision History    Hide
    Mouse over text for details
    2014-05-07
    Polymer description
    2014-02-12
    Sequence database correspondence
    2014-02-12
    Citation
    2013-12-11
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   1.32
    R-Value: 0.153 (obs.)
    R-Free: 0.185
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 24.46 α = 90.00 
    b = 40.06 β = 90.00 
    c = 65.41 γ = 90.00