4C5X

Ultra High Resolution Dickerson-Drew dodecamer B-DNA with 5-Hydroxymethylcystosine Modification

Structural Biology Knowledgebase: 4C5X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.173
  • R-Value Work: 0.142

Literature

Macromolecules
Sequence Display for 4C5X

Classification: DNA

Total Structure Weight: 7411.20

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(CP*GP*CP*GP*AP*AP*TP*TP*5HCP*GP*CP*GP)-3' A, B 12 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5HC
Query on 5HC
A, B DNA LINKING C10 H16 N3 O8 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.173
  • R-Value Work: 0.142
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 25.30 α = 90.00
b = 40.27 β = 90.00
c = 64.88 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2013-09-16
  • Released Date: 2013-10-02
  • Deposition author(s): McDonough, M., El-Sagheer, A.H., Brown, T., Schofield, C.J.

Revision History

  • 2014-02-12
    Type: Citation | Details: JRNL
  • 2013-12-11
    Type: Citation | Details: JRNL