4BVB

CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THE INHIBITOR EX-527 AND ADP-RIBOSE

Structural Biology Knowledgebase: 4BVB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BVB

Classification: HYDROLASE

Total Structure Weight: 32357.81

Macromolecule Entities
Molecule Chains Length Organism Details
NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL A 284 Homo sapiens EC#: 3.5.1 IUBMB
Gene Name(s): SIRT3 Gene View SIR2L3

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AR6
Query on AR6

A [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4- DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)- 3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
C15 H23 N5 O14 P2
SRNWOUGRCWSEMX-ZQSHOCFMSA-N
Ligand Explorer
 
JSmol
OCZ
Query on OCZ

A (1S)-6-chloro-2,3,4,9-tetrahydro-1H-carbazole- 1- carboxamide
C13 H13 Cl N2 O
FUZYTVDVLBBXDL-VIFPVBQESA-N
Ligand Explorer
 
JSmol
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
OCZ N/A in BindingDB
N/A in BindingMoad
Ki: 33400 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.170
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.50 α = 90.00
b = 64.15 β = 90.00
c = 67.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-25
  • Released Date: 2013-07-17
  • Deposition author(s): Gertz, M., Weyand, M., Steegborn, C.

Revision History

  • 2013-08-07
    Type: Citation | Details: JRNL