4BTV

Structure of PhaZ7 PHB depolymerase in complex with 3HB trimer

Structural Biology Knowledgebase: 4BTV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.157
  • R-Value Work: 0.133

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BTV

Classification: HYDROLASE

Total Structure Weight: 73507.63

Macromolecule Entities
Molecule Chains Length Organism Details
PHB DEPOLYMERASE PHAZ7 A, B 344 Paucimonas lemoignei EC#: 3.1.1.75 IUBMB
Fragment: RESIDUES 39-380
Mutation: S136A
Gene Name(s): phaZ7

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RB3
Query on RB3

A, B (1R)-3-{[(1R)-3-METHOXY-1-METHYL-3-OXOPROPYL]OXY}- 1-METHYL-3-OXOPROPYL (3R)-3-HYDROXYBUTANOATE
METHYL (3R)-3-{[(3R)-3-{[(3R)-3-HYDROXYBUTANOYL]OXY}BUTANOYL]OXY}BUTANOATE (Synonym)
C13 H22 O7
WGAHBMKAEWUQKL-OPRDCNLKSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.157
  • R-Value Work: 0.133
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 41.34 α = 90.00
b = 199.37 β = 114.24
c = 44.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-19
  • Released Date: 2013-09-18
  • Deposition author(s): Hermawan, S., Subedi, B., Papageorgiou, A.C., Jendrossek, D.

Revision History

  • 2013-12-25
    Type: Citation | Details: JRNL