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The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 3
DOI:10.2210/pdb4bpo/pdb   NDB ID: NA2552
4BPO
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
4BPE   4BPN   4BPO   4BPP  
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The complete entry has been assigned PDB ID 4BTS and is available for download in PDBx/mmCIF and PDBML/XML formats from the FTP archive at:
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/mmCIF/4bts.cif.gz
ftp://ftp.wwpdb.org/pub/pdb/data/large_structures/XML/4bts.xml.gz
 
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1236992.61
    Molecule: TRANSLATION INITIATION FACTOR EIF-1A FAMILY PROTEIN
    Polymer: 1 Type: protein Length: 211
    Chains: 0
    Organism: Tetrahymena thermophila
    Gene Name: TTHERM_00497990
    UniProtKB: Protein Feature View | Search PDB | I7MK25  
    Molecule: 40S RIBOSOMAL PROTEIN RPS28E
    Polymer: 2 Type: protein Length: 68
    Chains: 1
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBU6  
    Molecule: 40S RIBOSOMAL PROTEIN S8
    Polymer: 3 Type: protein Length: 208
    Chains: 2
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBS6  
    Molecule: 40S RIBOSOMAL PROTEIN RPS7E
    Polymer: 4 Type: protein Length: 197
    Chains: 3
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBS5  
    Molecule: 40S RIBOSOMAL PROTEIN S3A
    Polymer: 5 Type: protein Length: 265
    Chains: 4
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBR8  
    Molecule: 40S RIBOSOMAL PROTEIN RPS26E
    Polymer: 6 Type: protein Length: 119
    Chains: 5
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBU4  
    Molecule: 40S RIBOSOMAL PROTEIN S27
    Polymer: 7 Type: protein Length: 81
    Chains: 6
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBU5  
    Molecule: 40S RIBOSOMAL PROTEIN RPS10E
    Polymer: 8 Type: protein Length: 162
    Chains: 7
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBS8  
    Molecule: 40S RIBOSOMAL PROTEIN RPS25E
    Polymer: 9 Type: protein Length: 143
    Chains: 8
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBU3  
    Molecule: 40S RIBOSOMAL PROTEIN RPS31E
    Polymer: 10 Type: protein Length: 189
    Chains: 9
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBU9  
    Molecule: 18S RRNA
    Polymer: 11 Type: rna Length: 1753
    Chains: A
    Organism: Tetrahymena thermophila
    Molecule: 40S RIBOSOMAL PROTEIN SA
    Polymer: 12 Type: protein Length: 241
    Chains: B
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBR9  
    Molecule: 40S RIBOSOMAL PROTEIN RPS3E
    Polymer: 13 Type: protein Length: 243
    Chains: C
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBS1  
    Molecule: 40S RIBOSOMAL PROTEIN RPS9E
    Polymer: 14 Type: protein Length: 181
    Chains: D
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBS7  
    Molecule: 40S RIBOSOMAL PROTEIN RPS2E
    Polymer: 15 Type: protein Length: 296
    Chains: E
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBS0  
    Molecule: EIF1
    Polymer: 16 Type: protein Length: 101
    Chains: F
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBV1  
    Molecule: 40S RIBOSOMAL PROTEIN RPS5E
    Polymer: 17 Type: protein Length: 200
    Chains: G
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBS3  
    Molecule: 40S RIBOSOMAL PROTEIN RPS22E
    Polymer: 18 Type: protein Length: 130
    Chains: H
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBU0  
    Molecule: 40S RIBOSOMAL PROTEIN RPS16E
    Polymer: 19 Type: protein Length: 145
    Chains: I
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBT4  
    Molecule: 40S RIBOSOMAL PROTEIN RPS20E
    Polymer: 20 Type: protein Length: 120
    Chains: J
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBT8  
    Molecule: 40S RIBOSOMAL PROTEIN RPS14E
    Polymer: 21 Type: protein Length: 151
    Chains: K
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBT2  
    Molecule: 40S RIBOSOMAL PROTEIN S12
    Polymer: 22 Type: protein Length: 142
    Chains: L
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | P06147  
    Molecule: 40S RIBOSOMAL PROTEIN RPS18E
    Polymer: 23 Type: protein Length: 155
    Chains: M
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBT6  
    Molecule: 40S RIBOSOMAL PROTEIN RPS29E
    Polymer: 24 Type: protein Length: 55
    Chains: N
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBU7  
    Molecule: 40S RIBOSOMAL PROTEIN RPS13E
    Polymer: 25 Type: protein Length: 153
    Chains: O
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBT1  
    Molecule: 40S RIBOSOMAL PROTEIN S24
    Polymer: 26 Type: protein Length: 149
    Chains: P
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBU2  
    Molecule: 40S RIBOSOMAL PROTEIN RPS11E
    Polymer: 27 Type: protein Length: 157
    Chains: Q
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBS9  
    Molecule: 40S RIBOSOMAL PROTEIN RACK1
    Polymer: 28 Type: protein Length: 343
    Chains: R
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBV0  
    Molecule: 40S RIBOSOMAL PROTEIN RPS15E
    Polymer: 29 Type: protein Length: 144
    Chains: S
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBT3  
    Molecule: 40S RIBOSOMAL PROTEIN RPS19E
    Polymer: 30 Type: protein Length: 155
    Chains: T
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBT7  
    Molecule: 40S RIBOSOMAL PROTEIN RPS12E
    Polymer: 31 Type: protein Length: 126
    Chains: U
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBT0  
    Molecule: 40S RIBOSOMAL PROTEIN RPS17E
    Polymer: 32 Type: protein Length: 130
    Chains: V
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBT5  
    Molecule: 40S RIBOSOMAL PROTEIN RPS4E
    Polymer: 33 Type: protein Length: 259
    Chains: W
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBS2  
    Molecule: 40S RIBOSOMAL PROTEIN RPS30E
    Polymer: 34 Type: protein Length: 80
    Chains: X
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBU8  
    Molecule: 40S RIBOSOMAL PROTEIN S6
    Polymer: 35 Type: protein Length: 293
    Chains: Y
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBS4  
    Molecule: 40S RIBOSOMAL PROTEIN RPS21E
    Polymer: 36 Type: protein Length: 97
    Chains: Z
    Organism: Tetrahymena thermophila
    UniProtKB: Protein Feature View | Search PDB | E6PBT9  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Tetrahymena thermophila   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 3
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 4
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 5
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 6
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 7
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 8
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 9
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 10
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 11
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 12
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 13
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 14
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 15
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 16
    Scientific Name: Tetrahymena thermophila   Taxonomy   Expression System: Escherichia coli  
    Polymer: 17
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 18
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 19
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 20
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 21
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 22
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 23
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 24
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 25
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 26
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 27
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 28
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 29
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 30
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 31
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 32
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 33
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 34
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 35
    Scientific Name: Tetrahymena thermophila   Taxonomy    
    Polymer: 36
    Scientific Name: Tetrahymena thermophila   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4BTS  THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2552
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
PDB entry 4BPE