4BOP

Structure of OTUD1 OTU domain

Structural Biology Knowledgebase: 4BOP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.162

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BOP

Classification: HYDROLASE

Total Structure Weight: 34722.94

Macromolecule Entities
Molecule Chains Length Organism Details
OTU DOMAIN-CONTAINING PROTEIN 1 A, B 151 Homo sapiens EC#: 3.4.19.12 IUBMB
Fragment: RESIDUES 287-437
Gene Name(s): OTUD1 Gene View DUBA7 OTDC1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.162
  • Space Group: I 4
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 82.24 α = 90.00
b = 82.24 β = 90.00
c = 103.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-22
  • Released Date: 2013-07-17
  • Deposition author(s): Mevissen, T.E.T., Hospenthal, M.K., Geurink, P.P., Elliott, P.R., Akutsu, M., Arnaudo, N., Ekkebus, R., Kulathu, Y., Wauer, T., El Oualid, F., Freund, S.M.V., Ovaa, H., Komander, D.

Revision History

No revisions since initial release