4BME

Crystal structure of the N terminal domain of human Galectin 8, F19Y mutant

Structural Biology Knowledgebase: 4BME SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BME

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 35050.40

Macromolecule Entities
Molecule Chains Length Organism Details
GALECTIN-8 A, B 152 Homo sapiens Fragment: N TERMINAL DOMAIN, RESIDUES 4-155
Mutation: F19Y
Gene Name(s): LGALS8 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LBT
Query on LBT

A, B ALPHA-LACTOSE
C12 H22 O11
GUBGYTABKSRVRQ-XLOQQCSPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
LBT N/A in BindingDB
Ka: 13000 M-1  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.194
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 55.36 α = 90.00
b = 66.64 β = 90.00
c = 84.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-07
  • Released Date: 2014-03-19
  • Deposition author(s): Buzamet, E., Ruiz, F.M., Menendez, M., Romero, A., Gabius, H.J., Solis, D.

Revision History

No revisions since initial release