Scaffold Focused Virtual Screening: Prospective Application to the Discovery of TTK Inhibitor
4BI0
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 36967.63
    Molecule: DUAL SPECIFICITY PROTEIN KINASE TTK
    Polymer: 1 Type: protein Length: 313
    Chains: A
    EC#: 2.7.12.1   
    Fragment: KINASE DOMAIN, RESIDUES 518-807
    Organism: Homo sapiens
    Gene Names: Gene View for TTK MPS1 MPS1L1
    UniProtKB: Protein Feature View | Search PDB | P33981  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4BHZ   SCAFFOLD FOCUSED VIRTUAL SCREENING: PROSPECTIVE APPLICATION TO THE DISCOVERY OF TTK INHIBITOR 
    4BI1   SCAFFOLD FOCUSED VIRTUAL SCREENING: PROSPECTIVE APPLICATION TO THE DISCOVERY OF TTK INHIBITOR 
    4BI2   SCAFFOLD FOCUSED VIRTUAL SCREENING: PROSPECTIVE APPLICATION TO THE DISCOVERY OF TTK INHIBITOR 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    7PE
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    7PE C14 H30 O7
    2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL
    7PE:4BI0
    EDO
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    EDO C2 H6 O2
    1,2-ETHANEDIOL
    Z0W
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    Z0W C10 H7 N3
    5H-pyrimido[5,4-b]indole
    Z0W:4BI0
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    Z0W
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    Z0W
    N/Ain BindingDB
    N/Ain BindingMoad
    IC50: 58600 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Langdon, S.R.,  Westwood, I.M.,  van Montfort, R.L.M.,  Brown, N.,  Blagg, J.

    Deposition:   2013-04-09
    Release:   2013-05-22
    Last Modified (REVDAT):   2015-01-14
     
  •   Revision History    Hide
    Mouse over text for details
    2015-01-14
    Atom nomenclature
    2015-01-14
    Other
    2015-01-14
    Linkage
    2013-06-05
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.84
    R-Value: 0.186 (obs.)
    R-Free: 0.224
    Space Group: I 2 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 71.23 α = 90.00 
    b = 111.97 β = 90.00 
    c = 113.78 γ = 90.00