4BF9

Crystal structure of E. coli dihydrouridine synthase C (DusC) (selenomethionine derivative)

Structural Biology Knowledgebase: 4BF9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.177

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BF9

Classification: OXIDOREDUCTASE

Total Structure Weight: 38533.02

Macromolecule Entities
Molecule Chains Length Organism Details
TRNA-DIHYDROURIDINE SYNTHASE C A 338 Escherichia coli EC#: 1.3.1 IUBMB
Gene Name(s): dusC yohI b2140 JW2128
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.177
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 94.14 α = 90.00
b = 94.14 β = 90.00
c = 119.68 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-16
  • Released Date: 2013-11-06
  • Deposition author(s): Byrne, R.T., Whelan, F., Konevega, A., Aziz, N., Rodnina, M., Antson, A.A.

Revision History

  • 2015-05-27
    Type: Citation | Details: JRNL
  • 2015-05-13
    Type: Citation | Details: JRNL
  • 2015-04-22
    Type: Citation | Details: JRNL