4BAC

prototype foamy virus strand transfer complexes on product DNA

Structural Biology Knowledgebase: 4BAC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.26 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BAC

Classification: TRANSFERASE / DNA

Total Structure Weight: 112141.94


Macromolecule Entities
Molecule Chains Length Organism Details
INTEGRASE A, B 396 Simian foamy virus EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.26.13 IUBMB
Gene Name(s): pol
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP *TP*TP*GP*TP*AP)-3' C 19 Synthetic construct
DNA (38-MER) D 38 Synthetic construct
5'-D(*AP*GP*GP*AP*GP*CP*CP*AP*AP*GP*AP*CP*GP*GP *AP*TP*CP)-3' E 17 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.26 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.185
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 160.62 α = 90.00
b = 160.62 β = 90.00
c = 125.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-12
  • Released Date: 2012-10-10
  • Deposition author(s): Yin, Z., Lapkouski, M., Yang, W., Craigie, R.

Revision History

  • 2012-12-12
    Type: Citation | Details: JRNL
  • 2012-12-12
    Type: Function and keywords | Details: KEYWDS
  • 2012-12-12
    Type: Other | Details: HEADER