4BA0

Crystal Structure of Agd31B, alpha-transglucosylase, complexed with 5F-alpha-GlcF

Structural Biology Knowledgebase: 4BA0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.167

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4BA0

Classification: HYDROLASE

Total Structure Weight: 93876.42

Macromolecule Entities
Molecule Chains Length Organism Details
ALPHA-GLUCOSIDASE, PUTATIVE, ADG31B A 817 Cellvibrio japonicus EC#: 2.4.1.161 IUBMB
Gene Name(s): agd31B CJA_3248

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5GF
Query on 5GF

A 5-FLUORO-BETA-D-GLUCOPYRANOSE
C6 H11 F O6
YQZCKDSOGGIGPL-VFUOTHLCSA-N
Ligand Explorer
 
JSmol
ARG
Query on ARG

A ARGININE
C6 H15 N4 O2
ODKSFYDXXFIFQN-BYPYZUCNSA-O
Ligand Explorer
 
JSmol
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
PGE
Query on PGE

A TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.167
  • Space Group: P 6 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 197.23 α = 90.00
b = 197.23 β = 90.00
c = 103.06 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-09
  • Released Date: 2012-11-14
  • Deposition author(s): Larsbrink, J., Izumi, A., Hemsworth, G.R., Davies, G.J., Brumer, H.

Revision History

  • 2013-01-16
    Type: Citation | Details: JRNL
  • 2012-11-21
    Type: Citation | Details: JRNL