4AYD

Structure of a complex between CCPs 6 and 7 of Human Complement Factor H and Neisseria meningitidis FHbp Variant 1 R106A mutant

Structural Biology Knowledgebase: 4AYD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.202

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AYD

Classification: IMMUNE SYSTEM

Total Structure Weight: 126321.52

Macromolecule Entities
Molecule Chains Length Organism Details
COMPLEMENT FACTOR H A, B, E 125 Homo sapiens Fragment: CCPS 6 AND 7, RESIDUES 321-443
Mutation: Y402H
Gene Name(s): CFH Gene View HF HF1 HF2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FACTOR H BINDING PROTEIN C, D, F 257 Neisseria meningitidis Fragment: RESIDUES 73-320
Mutation: R106A
Gene Name(s): NMB1870
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

C, D, E, F 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.202
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 185.26 α = 90.00
b = 54.01 β = 118.03
c = 129.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-20
  • Released Date: 2012-11-07
  • Deposition author(s): Johnson, S., Tan, L., van der Veen, S., Caesar, J., Goicoechea De Jorge, E., Everett, R.J., Bai, X., Exley, R.M., Ward, P.N., Ruivo, N., Trivedi, K., Cumber, E., Jones, R., Newham, L., Staunton, D., Borrow, R., Pickering, M., Lea, S.M., Tang, C.M.

Revision History

  • 2015-03-25
    Type: Citation | Details: JRNL
  • 2012-11-21
    Type: Citation | Details: JRNL