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CRYSTAL STRUCTURE OF THE BZIP HOMODIMERIC MAFB IN COMPLEX WITH THE C- MARE BINDING SITE
DOI:10.2210/pdb4auw/pdb   NDB ID: NA2472
4AUW
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription
    Structure Weight: 72885.18
    Molecule: TRANSCRIPTION FACTOR MAFB
    Polymer: 1 Type: protein Length: 96
    Chains: A, B, E, F
    Fragment: RESIDUES 211-305
    Mutation: YES
    Organism: Mus musculus
    Gene Names: Mafb Krml Maf1
    UniProtKB: Protein Feature View | Search PDB | P54841  
    Molecule: C-MARE BINDING SITE (5'-D(*AP*TP*AP*AP*TP*GP*CP*TP* GP*AP*CP*GP*TP*CP*AP*GP*CP*AP*AP*TP*T)-3')
    Polymer: 2 Type: dna Length: 21
    Chains: C, H
    Organism: synthetic construct
    Molecule: C-MARE BINDING SITE (5'-D(*AP*TP*AP*AP*TP*GP*CP*TP* GP*AP*CP*GP*TP*CP*AP*GP*CP*AP*AP*TP*T)-3')
    Polymer: 3 Type: dna Length: 21
    Chains: D, G
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    DTU
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    DTU C4 H10 O2 S2
    (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
    HG
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    HG Hg
    MERCURY (II) ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2472
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Textor, L.C.,  Holton, S.,  Wilmanns, M.

    Deposition:   2012-05-22
    Release:   2013-06-05
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.90
    R-Value: 0.257 (obs.)
    R-Free: 0.290
    Space Group: P 43 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 94.96 α = 90.00 
    b = 94.96 β = 90.00 
    c = 200.11 γ = 90.00