POP-OUT | CLOSE
 
substrate bound homogentisate 1,2-dioxygenase
4AQ6
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Oxidoreductase
    Structure Weight: 579702.29
    Molecule: HOMOGENTISATE 1,2-DIOXYGENASE
    Polymer: 1 Type: protein Length: 433
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    EC#: 1.13.11.5   
    Organism: Pseudomonas putida KT2440
    Gene Names: hmgA PP_4621
    UniProtKB: Protein Feature View | Search PDB | Q88E47  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Pseudomonas putida   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3ZDS  STRUCTURE OF HOMOGENTISATE 1,2-DIOXYGENASE IN COMPLEX WITH REACTION INTERMEDIATES OF HOMOGENTISATE WITH OXYGEN. 
    4AQ2  RESTING STATE OF HOMOGENTISATE 1,2-DIOXYGENASE 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    B3P
    Search 
    Download 
    B3P C11 H26 N2 O6
    2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3- DIOL
    FE
    Search 
    Download 
    FE Fe
    FE (III) ION
    OMD
    Search 
    Download 
    OMD C8 H8 O4
    2-(3,6-DIHYDROXYPHENYL)ACETIC ACID
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Jeoung, J.-H.,  Lin, T.-Y.,  Bommer, M.,  Dobbek, H.

    Deposition:   2012-04-12
    Release:   2013-04-24
    Last Modified (REVDAT):   2013-08-14
     
  •   Revision History    Hide
    Mouse over text for details
    2013-08-14
    Citation
    2013-07-24
    Citation
    2013-07-24
    Other
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.98
    R-Value: 0.164 (obs.)
    R-Free: 0.216
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 93.39 α = 87.69 
    b = 93.71 β = 80.42 
    c = 162.98 γ = 68.39