4AP9

Crystal structure of phosphoserine phosphatase from T. onnurineus in complex with NDSB-201

Structural Biology Knowledgebase: 4AP9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 4AP9

Classification: HYDROLASE

Total Structure Weight: 94595.93

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOSERINE PHOSPHATASE A, B, C, D 201 Thermococcus onnurineus EC#: 3.1.3.3 IUBMB
Gene Name(s): TON_1161
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1PS
Query on 1PS

A, B, C, D 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE
PPS, (Synonym)
C8 H11 N O3 S
REEBJQTUIJTGAL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.195
  • Space Group: P 4

Unit Cell:

Length (Å) Angle (°)
a = 128.13 α = 90.00
b = 128.13 β = 90.00
c = 63.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-31
  • Released Date: 2012-12-26
  • Deposition author(s): Jung, T.-Y., Kim, Y.-S., Song, H.-N., Woo, E.

Revision History

  • 2013-04-17
    Type: Citation | Details: JRNL