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CRYSTAL STRUCTURE OF THE GRACILARIOPSIS LEMANEIFORMIS ALPHA-1,4- GLUCAN LYASE Covalent Intermediate Complex with 5-fluoro-idosyl- fluoride
4AMW
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Lyase
    Structure Weight: 465671.23
    Molecule: ALPHA-1,4-GLUCAN LYASE ISOZYME 1
    Polymer: 1 Type: protein Length: 1027
    Chains: A, B, C, D
    EC#: 4.2.2.13   
    Fragment: RESIDUES 62-1088
    Organism: Gracilariopsis lemaneiformis
    Gene Name: Ag111
    UniProtKB: Protein Feature View | Search PDB | Q9STC1  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Gracilariopsis lemaneiformis   Taxonomy   Expression System: Pichia angusta  
     
  •   Related PDB Entries Hide
    Identifier Details
    4AMX  CRYSTAL STRUCTURE OF THE GRACILARIOPSIS LEMANEIFORMIS ALPHA-1,4-GLUCAN LYASE COVALENT INTERMEDIATE COMPLEX WITH 5-FLUORO-GLUCOSYL-FLUORIDE 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    5DI
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    5DI C6 H9 F O5
    2-OXO-1,2,DIDEOXY-5F-D-IDOPYRANOSE
    B9D
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    B9D C6 H11 F O6
    (2R,3R,4R,5S,6R)-6-fluoranyl-6-(hydroxymethyl)oxane- 2,3,4,5-tetrol
    GOL
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    GOL C3 H8 O3
    GLYCEROL
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    CSO
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    CSO C3 H7 N O3 S CYS lPeptideLinking
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Rozeboom, H.J.,  Yu, S.,  Madrid, S.,  Kalk, K.H.,  Dijkstra, B.W.

    Deposition:   2012-03-14
    Release:   2013-03-27
    Last Modified (REVDAT):   2013-09-25
     
  •   Revision History    Hide
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    2013-09-25
    Citation
    2013-08-14
    Refinement description
    2013-08-14
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.90
    R-Value: 0.209 (obs.)
    R-Free: 0.254
    Space Group: P 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 92.10 α = 80.31 
    b = 97.30 β = 83.29 
    c = 136.28 γ = 85.21