4AMH

Influence of circular permutation on the folding pathway of a PDZ domain

Structural Biology Knowledgebase: 4AMH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AMH

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 22960.64

Macromolecule Entities
Molecule Chains Length Organism Details
DISKS LARGE HOMOLOG 1 A, B 106 Homo sapiens Fragment: PDZ2 DOMAIN
Mutation: I28W, C64A
Gene Name(s): DLG1 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.220
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 106.90 α = 90.00
b = 43.60 β = 103.70
c = 51.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-10
  • Released Date: 2012-12-05
  • Deposition author(s): Hultqvist, G., Punekar, A.S., Chi, C.N., Selmer, M., Gianni, S., Jemth, P.

Revision History

  • 2012-12-12
    Type: Citation | Details: JRNL