482D

RELEASE OF THE CYANO MOIETY IN THE CRYSTAL STRUCTURE OF N-CYANOMETHYL-N-(2-METHOXYETHYL)-DAUNOMYCIN COMPLEXED WITH D(CGATCG)

Structural Biology Knowledgebase: 482D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.230

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 482D

Classification: DNA

Total Structure Weight: 2426.88

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*AP*TP*CP*G)-3' A 6 synthetic COMPLEXED WITH (2-METHOXYETHYL)-DAUNOMYCIN

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DM9
Query on DM9

A N-HYDROXYMETHYL-N-(2-METHOXYETHYL)-DAUNOMYCIN
C31 H39 N O12
IURHBLXSEHXXFF-XGGCRALDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.230
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 28.16 α = 90.00
b = 28.16 β = 90.00
c = 53.40 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1999-07-27
  • Released Date: 1999-09-15
  • Deposition author(s): Saminadin, P., Dautant, A., Mondon, M., Langlois D'Estaintot, B., Courseille, C., Precigoux, G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4