CRYSTAL STRUCTURE OF THE B-DNA DODECAMER 5'-D(CGCGAA(TAF)TCGCG), WHERE TAF IS 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE
DOI:10.2210/pdb478d/pdb   NDB ID: BD0020
478D
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 7483.06
    Molecule: 5'-D(*CP*GP*CP*GP*AP*AP*(TAF)P*TP*CP*GP*CP*G)-3'
    Polymer: 1 Type: dna Length: 12
    Chains: A, B
    Mutation: INCORPORATED 2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    TAF
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    TAF C10 H14 F N2 O8 P DT dnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:BD0020
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Minasov, G.,  Tereshko, V.,  Egli, M.

    Deposition:   1999-06-26
    Release:   1999-07-19
    Last Modified (REVDAT):   2011-11-16
     
  •   Revision History    Hide
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    2011-11-16
    Atom occupancy
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.20
    R-Value: 0.197 (obs.)
    R-Free: 0.262
    Space Group: H 3
    Unit Cell:
      Length [Å] Angles [°]
    a = 42.31 α = 90.00 
    b = 42.31 β = 90.00 
    c = 99.68 γ = 120.00