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INTERCALATION AND MAJOR GROOVE RECOGNITION IN THE 1.2 A RESOLUTION CRYSTAL STRUCTURE OF RH[ME2TRIEN]PHI BOUND TO 5'-G(5IU)TGCAAC-3'
 
 
DOI:10.2210/pdb454d/pdb   NDB ID: UD0005
454D
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 27777.10
     
    Molecule:5'-D(*GP*(5IU)P*TP*GP*CP*AP*AP*C)-3'
    Polymer:1Type:polydeoxyribonucleotideLength:8
    Chains:A, B, C, D, E, F, G, H, I, J
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    RHM     DELTA-ALPHA-RH[2R,9R-DIAMINO-4,7-DIAZADECANE]9,10- PHENANTHRENEQUINONE DIIMINE C22 H27 N6 Rh 3DLigand Explorer Link out to Ligand Expos:RHM Link out to SuperLigands:RHM Link out to SuperHapten:RHM
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    5IU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE (parent: DU)(type: dnaLinking) C9 H12 I N2 O8 P Link out to Ligand Expos:5IU Link out to SuperLigands:5IU Link out to SuperHapten:5IU 2D
     
     
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< Biological Assembly 1    Help >
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Biological assembly 1 assigned by authors
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Kielkopf, C.L.,   Erkkila, K.E.,   Hudson, B.P.,   Barton, J.K.,   Rees, D.C.

    Deposition:   1999-03-03
    Release:   2000-02-21
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   N/A
    View a histogram of Resolution Resolution[Å]: 1.20
    R-Value: 0.170 (obs.)
    R-Free: 0.210
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 94.74 α = 90.00 
    b = 23.98 β = 93.24 
    c = 96.52 γ = 90.00