453D

5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'-BENZIMIDAZOLE COMPLEX

  • Classification: DNA
  • Deposited: 1999-02-18 Released: 2000-05-15
  • Deposition author(s): Neidle, S.

Structural Biology Knowledgebase: 453D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.234

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 453D

Classification: DNA

Total Structure Weight: 7745.30

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') A, B 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
E96
Query on E96

A 4-{[4-HYDROXY-PHENYL]-1H-BENZIMIDAZOLE-5- YL}-BENZIMIDAZOLE-2-YL-[4-HYDROXY-BENZENE]
C26 H18 N4 O2
LUIYJLIHLJLIPT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.234
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 25.46 α = 90.00
b = 39.96 β = 90.00
c = 65.66 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1999-02-18
  • Released Date: 2000-05-15
  • Deposition author(s): Neidle, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4