452D

ACRIDINE BINDING TO DNA

Structural Biology Knowledgebase: 452D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Observed: 0.202

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 452D

Classification: DNA

Total Structure Weight: 2544.17

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') A 6 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
9AD
Query on 9AD

A 9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE- 4-CARBOXAMIDE
C18 H20 N4 O
YLGMVQJPGUHTRO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Observed: 0.202
  • Space Group: P 64

Unit Cell:

Length (Å) Angle (°)
a = 30.16 α = 90.00
b = 30.16 β = 90.00
c = 39.69 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1999-02-18
  • Released Date: 2003-03-04
  • Deposition author(s): Thorpe, J.H., Todd, A.K., Cardin, C.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4