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CRYSTAL STRUCTURE OF AN RNA PSEUDOKNOT FROM BEET WESTERN YELLOW VIRUS INVOLVED IN RIBOSOMAL FRAMESHIFTING
DOI:10.2210/pdb437d/pdb   NDB ID: UR0004
437D
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA
    Structure Weight: 9292.84
    Molecule: RNA PSEUDOKNOT
    Polymer: 1 Type: rna Length: 28
    Chains: A
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
    NA
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    NA Na
    SODIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    GTP
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    GTP C10 H16 N5 O14 P3 G nonPolymer
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: UR0004
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Su, L.,  Chen, L.,  Egli, M.,  Berger, J.M.,  Rich, A.

    Deposition:   1998-11-24
    Release:   1998-12-03
    Last Modified (REVDAT):   2011-11-16
     
  •   Revision History    Hide
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    2011-11-16
    Atom occupancy
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.60
    R-Value: 0.207 (obs.)
    R-Free: 0.254
    Space Group: P 32 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 30.08 α = 90.00 
    b = 30.08 β = 90.00 
    c = 140.08 γ = 120.00