432D

D(GGCCAATTGG) COMPLEXED WITH DAPI

Structural Biology Knowledgebase: 432D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Work:

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 432D

Classification: DNA

Total Structure Weight: 6447.44

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3') A, B 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DAP
Query on DAP

A 6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE
C16 H15 N5
FWBHETKCLVMNFS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Observed:
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 25.62 α = 90.00
b = 36.56 β = 90.00
c = 52.96 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1998-10-14
  • Released Date: 1999-12-18
  • Deposition author(s): Vlieghe, D., Van Meervelt, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4