430D

STRUCTURE OF SARCIN/RICIN LOOP FROM RAT 28S RRNA

Structural Biology Knowledgebase: 430D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.330
  • R-Value Work: 0.280

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 430D

Classification: RNA

Total Structure Weight: 9674.37

Macromolecule Entities
Molecule Chains Length Organism Details
SARCIN/RICIN LOOP FROM RAT 28S R-RNA A 29 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CBV
Query on CBV
A RNA LINKING C9 H13 Br N3 O8 P C

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.330
  • R-Value Work: 0.280
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 56.83 α = 90.00
b = 56.83 β = 90.00
c = 107.96 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1998-10-04
  • Released Date: 1998-10-07
  • Deposition author(s): Correll, C.C., Munishkin, A., Chan, Y-L., Ren, Z., Wool, I.G., Steitz, T.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4