3VZS

Crystal structure of PhaB from Ralstonia eutropha in complex with Acetoacetyl-CoA and NADP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.165

Literature

Macromolecules
Sequence Display for 3VZS

Classification: OXIDOREDUCTASE

Total Structure Weight: 117453.44

Macromolecule Entities
Molecule Chains Length Organism Details
Acetoacetyl-CoA reductase A, B, C, D 257 Cupriavidus necator EC#: 1.1.1.36 IUBMB
Gene Name(s): phbB phaB H16_A1439
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CAA
Query on CAA

A, B, C, D ACETOACETYL-COENZYME A
C25 H40 N7 O18 P3 S
OJFDKHTZOUZBOS-CITAKDKDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAP
Query on NAP

A, B, C, D NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.14 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.165
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 67.40 α = 90.00
b = 123.44 β = 90.00
c = 260.25 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-15
  • Released Date: 2013-08-28
  • Deposition author(s): Ikeda, K., Tanaka, Y., Tanaka, I., Yao, M.

Revision History

  • Version 1_0: 2013-08-28

    Type: Initial release

  • Version 1_1: 2013-12-18

    Type: Database references, Structure summary

  • Version 1_2: 2017-11-22

    Type: Refinement description