3VK9

Crystal structure of delta-class glutathione transferase from silkmoth


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 3VK9

Classification: TRANSFERASE

Total Structure Weight: 97759.78

Macromolecule Entities
Molecule Chains Length Organism Details
Glutathione S-transferase delta A, B, C, D 216 Bombyx mori EC#: 2.5.1.18 IUBMB
Gene Name(s): GST delta GSTd2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.189
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 128.39 α = 90.00
b = 162.18 β = 90.00
c = 86.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-10
  • Released Date: 2012-10-03
  • Deposition author(s): Kakuta, Y., Usuda, K., Higashiura, A., Suzuki, M., Nakagawa, A., Kimura, M., Yamamoto, K.

Revision History

  • Version 1_0: 2012-10-03

    Type: Initial release