3VH8

KIR3DL1 in complex with HLA-B*5701

Structural Biology Knowledgebase: 3VH8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VH8

Classification: IMMUNE SYSTEM

Total Structure Weight: 159889.77

Macromolecule Entities
Molecule Chains Length Organism Details
HLA class I histocompatibility antigen, B-57 alpha chain A, D 275 Homo sapiens Fragment: HLA-B*5701, UNP residues 25-299
Gene Name(s): HLA-B Gene View HLAB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B, E 99 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
peptide of Ig kappa chain C region C, F 9 Homo sapiens Fragment: UNP residues 93-101
Gene Name(s): IGKC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Killer cell immunoglobulin-like receptor 3DL1 G, H 316 Homo sapiens Fragment: KIR3DL1*001, UNP residues 22-320
Gene Name(s): KIR3DL1 Gene View CD158E NKAT3 NKB1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

G, H N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.211
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.25 α = 100.56
b = 66.37 β = 92.83
c = 93.36 γ = 101.56

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-24
  • Released Date: 2011-10-26
  • Deposition author(s): Vivian, J.P., Rossjohn, J.

Revision History

  • 2011-12-07
    Type: Citation | Details: Citation update