3UIP

Complex between human RanGAP1-SUMO1, UBC9 and the IR1 domain from RanBP2 containing IR2 Motif II

Structural Biology Knowledgebase: 3UIP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.191

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UIP

Classification: Ligase / Isomerase / Protein Binding

Total Structure Weight: 53801.11

Macromolecule Entities
Molecule Chains Length Organism Details
SUMO-conjugating enzyme UBC9 A 158 Homo sapiens EC#: 6.3.2 IUBMB
Gene Name(s): UBE2I Gene View UBC9 UBCE9
Small ubiquitin-related modifier 1 B 80 Homo sapiens Fragment: UNP residues 18-97
Gene Name(s): SUMO1 Gene View SMT3C SMT3H3 UBL1 OK/SW-cl.43
Ran GTPase-activating protein 1 C 171 Homo sapiens Fragment: UNP residues 419-587
Gene Name(s): RANGAP1 Gene View KIAA1835 SD
E3 SUMO-protein ligase RanBP2 D 67 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: UNP residues 2631-2695
Mutation: A2642V, Q2644E, L2647K, T2649D, K2650T
Details: Motif II of RanBP2 IR1 was mutated to IR2 motif II.
Gene Name(s): RANBP2 Gene View NUP358

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
CSD
Query on CSD
A L-PEPTIDE LINKING C3 H7 N O4 S CYS
CME
Query on CME
A, D L-PEPTIDE LINKING C5 H11 N O3 S2 CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.191
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 136.65 α = 90.00
b = 199.19 β = 90.00
c = 63.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-05
  • Released Date: 2011-12-28
  • Deposition author(s): Gareau, J.R., Reverter, D., Lima, C.D.

Revision History

  • 2013-06-26
    Type: Citation | Details: Citation update
  • 2012-01-04
    Type: Citation | Details: Citation update