3TIJ

Crystal structure of a concentrative nucleoside transporter from Vibrio cholerae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 3TIJ

Classification: MEMBRANE PROTEIN

Total Structure Weight: 46851.88

Macromolecule Entities
Molecule Chains Length Organism Details
NupC family protein A 424 Vibrio cholerae Gene Name(s): VC_2352
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Solute Carrier (SLC) Transporter Superfamily

Protein Name: Concentrative nucleoside transporter (CNT) in complex with uridine


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DMU
Query on DMU

A DECYL-BETA-D-MALTOPYRANOSIDE
DECYLMALTOSIDE (Synonym)
C22 H42 O11
WOQQAWHSKSSAGF-WXFJLFHKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
URI
Query on URI

A URIDINE
C9 H12 N2 O6
DRTQHJPVMGBUCF-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.196
  • Space Group: P 63

Unit Cell:

Length (Å) Angle (°)
a = 119.72 α = 90.00
b = 119.72 β = 90.00
c = 83.14 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-20
  • Released Date: 2012-03-07
  • Deposition author(s): Johnson, Z.L., Cheong, C.-G., Lee, S.-Y.

Revision History

  • Version 1_0: 2012-03-07

    Type: Initial release

  • Version 1_1: 2013-06-26

    Type: Database references