3THX

Human MutSbeta complexed with an IDL of 3 bases (Loop3) and ADP

Structural Biology Knowledgebase: 3THX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3THX

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 224632.14


Macromolecule Entities
Molecule Chains Length Organism Details
DNA mismatch repair protein Msh2 A 934 Homo sapiens Gene Name(s): MSH2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA mismatch repair protein Msh3 B 918 Homo sapiens Fragment: UNP residues 219-1137
Gene Name(s): MSH3 Gene View DUC1 DUG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA Loop3 minus strand D 24 synthetic
DNA Loop3 plus strand E 25 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.210
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.12 α = 67.88
b = 91.54 β = 86.51
c = 95.58 γ = 72.86

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-19
  • Released Date: 2011-12-21
  • Deposition author(s): Yang, W.

Revision History

  • 2013-06-26
    Type: Citation | Details: Citation update