3T9I

Pim1 complexed with a novel 3,6-disubstituted indole at 2.6 Ang Resolution

Structural Biology Knowledgebase: 3T9I SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.162

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3T9I

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 37914.41

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene serine/threonine-protein kinase pim-1 A 328 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: Kinase domain, unp residues 93-404
Gene Name(s): PIM1 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3T9
Query on 3T9

A 2-methoxy-4-(3-phenyl-2H-pyrazolo[3,4-b]pyridin- 6-yl)phenol
C19 H15 N3 O2
CCYHSISZPCXEEF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
A L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.162
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 96.21 α = 90.00
b = 96.21 β = 90.00
c = 80.25 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-02
  • Released Date: 2011-10-12
  • Deposition author(s): Bellamacina, C., Shu, W., Le, V., Nishiguchi, G., Bussiere, D.

Revision History

  • 2011-11-02
    Type: Citation | Details: Citation update