3T5G

Structure of fully modified farnesylated Rheb in complex with PDE6D

Structural Biology Knowledgebase: 3T5G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3T5G

Classification: SIGNALING PROTEIN LIPID BINDING PROTEIN

Total Structure Weight: 38507.42

Macromolecule Entities
Molecule Chains Length Organism Details
GTP-binding protein Rheb A 181 Homo sapiens Mutation: A174C
Gene Name(s): RHEB Gene View RHEB2
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta B 152 Homo sapiens Gene Name(s): PDE6D Gene View PDED

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FAR
Query on FAR

A FARNESYL
C15 H26
JXBSHSBNOVLGHF-BUJBXKITSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CMT
Query on CMT
A L-PEPTIDE LINKING C4 H9 N O2 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.198
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 47.89 α = 90.00
b = 57.38 β = 90.00
c = 134.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-07-27
  • Released Date: 2011-10-26
  • Deposition author(s): Ismail, S.A., Chen, Y.-X., Wittinghofer, A.

Revision History

  • 2013-09-25
    Type: Biological assembly | Details: --
  • 2011-11-30
    Type: Citation | Details: Citation update