3SAF

Crystal structure of the human RRP6 catalytic domain with D313N mutation in the active site


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 3SAF

Classification: HYDROLASE

Total Structure Weight: 100935.79

Macromolecule Entities
Molecule Chains Length Organism Details
Exosome component 10 A, B 428 Homo sapiens EC#: 3.1.13 IUBMB
Fragment: UNP residues 180-606
Mutation: D313N
Gene Name(s): EXOSC10 Gene View PMSCL PMSCL2 RRP6
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
YT3
Query on YT3

A, B YTTRIUM (III) ION
Y
GRTBAGCGDOYUBE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.205
  • Space Group: P 4

Unit Cell:

Length (Å) Angle (°)
a = 138.90 α = 90.00
b = 138.90 β = 90.00
c = 58.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-06-02
  • Released Date: 2011-07-06
  • Deposition author(s): Januszyk, K., Liu, Q., Lima, C.D.

Revision History

  • Version 1_0: 2011-07-06

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2011-08-03

    Type: Database references