Crystal structure of putative amidohydrolase-2 (EFI-target 500288)from Polaromonas sp. JS666
Ramagopal, U.A., Toro, R., Girlt, J.A., Almo, S.C.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Amidohydrolase 2 | 348 | Polaromonas sp. JS666 | Mutation(s): 0  Gene Names: Bpro_2061 | ||
UniProt | |||||
Find proteins for Q12BV1 (Polaromonas sp. (strain JS666 / ATCC BAA-500)) Explore Q12BV1  Go to UniProtKB:  Q12BV1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q12BV1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EPE Query on EPE | DA [auth D] I [auth A] Q [auth B] QA [auth F] RA [auth F] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N | |||
SO4 Query on SO4 | AB [auth G] BB [auth G] CB [auth G] DB [auth G] EA [auth D] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | CA [auth C], JA [auth D], VA [auth F] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
ACT Query on ACT | AA [auth C] BA [auth C] EB [auth G] FB [auth G] GB [auth G] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
CL Query on CL | X [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 81.024 | α = 90 |
b = 151.241 | β = 91.96 |
c = 143.41 | γ = 90 |
Software Name | Purpose |
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SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
CBASS | data collection |
HKL-2000 | data reduction |
MOLREP | phasing |