3RUI

Crystal structure of Atg7C-Atg8 complex

Structural Biology Knowledgebase: 3RUI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 3RUI

Classification: LIGASE

Total Structure Weight: 52144.40

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-like modifier-activating enzyme ATG7 A 340 Saccharomyces cerevisiae Fragment: C-TERMINAL DOMAIN (UNP RESIDUES 293-630)
Mutation: C507S
Gene Name(s): ATG7 Gene View APG7 CVT2 YHR171W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Autophagy-related protein 8 B 118 Saccharomyces cerevisiae Fragment: UNP RESIDUES 1-116
Gene Name(s): ATG8 APG8 AUT7 CVT5 YBL078C YBL0732
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.192
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 71.33 α = 90.00
b = 71.33 β = 90.00
c = 220.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-05
  • Released Date: 2011-11-23
  • Deposition author(s): Hong, S.B., Kim, B.W., Song, H.K.

Revision History

  • 2013-07-03
    Type: Citation | Details: Citation update