3R45

Structure of a CENP-A-Histone H4 Heterodimer in complex with chaperone HJURP

Structural Biology Knowledgebase: 3R45 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3R45

Classification: NUCLEAR PROTEIN

Total Structure Weight: 40400.31

Macromolecule Entities
Molecule Chains Length Organism Details
Histone H3-like centromeric protein A A 156 Homo sapiens Gene Name(s): CENPA Gene View
Histone H4 B 103 Homo sapiens Gene Name(s): HIST1H4A Gene View H4/A H4FA HIST1H4B Gene View H4/I H4FI HIST1H4C Gene View H4/G H4FG HIST1H4D Gene View H4/B H4FB HIST1H4E Gene View H4/J H4FJ HIST1H4F Gene View H4/C H4FC HIST1H4H Gene View H4/H H4FH HIST1H4I Gene View H4/M H4FM HIST1H4J Gene View H4/E H4FE HIST1H4K Gene View H4/D H4FD HIST1H4L Gene View H4/K H4FK HIST2H4A Gene View H4/N H4F2 H4FN HIST2H4 HIST2H4B Gene View H4/O H4FO HIST4H4 Gene View
Holliday junction recognition protein C 81 Homo sapiens Fragment: residues 1-80
Gene Name(s): HJURP Gene View FAKTS FLEG1 URLC9

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.185
  • Space Group: P 3 1 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 83.94 α = 90.00
b = 83.94 β = 90.00
c = 86.77 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-17
  • Released Date: 2011-04-06
  • Deposition author(s): Hu, H., Liu, Y., Wang, M., Fang, J., Huang, H., Yang, N., Li, Y., Wang, J., Yao, X., Shi, Y., Li, G., Xu, R.M.

Revision History

  • 2011-12-28
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4