3QYZ

Crystal structure of ERK2 in complex with an inhibitor

Structural Biology Knowledgebase: 3QYZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.161

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3QYZ

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 43736.77

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 1 A 364 Rattus norvegicus EC#: 2.7.11.24 IUBMB
Gene Name(s): Mapk1 Erk2 Mapk Prkm1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
Z8B
Query on Z8B

A 5'-azido-8-bromo-5'-deoxyadenosine
C10 H11 Br N8 O3
USVISQHKGJAQDS-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

A BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CME
Query on CME
A L-PEPTIDE LINKING C5 H11 N O3 S2 CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.161
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 48.69 α = 90.00
b = 70.24 β = 108.53
c = 59.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-04
  • Released Date: 2011-08-24
  • Deposition author(s): Gelin, M., Pochet, S., Hoh, F., Pirochi, M., Guichou, J.-F., Ferrer, J.-L., Labesse, G.

Revision History

  • 2012-03-21
    Type: Citation | Details: Citation update