3QWW

Crystal structure of histone lysine methyltransferase SmyD2 in complex with the methyltransferase inhibitor sinefungin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 3QWW

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 50219.64

Macromolecule Entities
Molecule Chains Length Organism Details
SET and MYND domain-containing protein 2 A 433 Mus musculus EC#: 2.1.1 IUBMB
Gene Name(s): Smyd2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SFG
Query on SFG

A SINEFUNGIN
ADENOSYL-ORNITHINE (Synonym)
C15 H23 N7 O5
LMXOHSDXUQEUSF-YECHIGJVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.186
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 57.52 α = 90.00
b = 75.15 β = 90.00
c = 112.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-02-28
  • Released Date: 2011-07-06
  • Deposition author(s): Jiang, Y., Sirinupong, N., Brunzelle, J., Yang, Z.

Revision History

  • Version 1_0: 2011-07-06

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2012-03-21

    Type: Database references