3QQD

Human SOD1 H80R variant, P212121 crystal form

Structural Biology Knowledgebase: 3QQD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.145

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3QQD

Classification: OXIDOREDUCTASE

Total Structure Weight: 32132.42

Macromolecule Entities
Molecule Chains Length Organism Details
Superoxide dismutase [Cu-Zn] A 154 Homo sapiens EC#: 1.15.1.1 IUBMB
Mutation: H80R
Gene Name(s): SOD1 Gene View
Superoxide dismutase [Cu-Zn] B 154 Homo sapiens EC#: 1.15.1.1 IUBMB
Mutation: H80R
Gene Name(s): SOD1 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 3 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
A, B NON-POLYMER C2 H4 O --
OCS
Query on OCS
A L-PEPTIDE LINKING C3 H7 N O5 S CYS
CSX
Query on CSX
B L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.145
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.24 α = 90.00
b = 58.43 β = 90.00
c = 104.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-02-15
  • Released Date: 2011-03-09
  • Deposition author(s): Seetharaman, S.V., Winkler, D.D., Taylor, A.B., Cao, X., Whitson, L.J., Doucette, P.A., Valentine, J.S., Schirf, V., Demeler, B., Carroll, M.C., Culotta, V.C., Hart, P.J.
  • Previous versions: 3H2R

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4