3QF9

Crystal structure of human proto-oncogene serine threonine kinase (PIM1) in complex with a consensus peptide and a furan-thiazolidinedione ligand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 3QF9

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 37876.46

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene serine/threonine-protein kinase pim-1 A 313 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: unp residues 92-403
Mutation: R250G
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
pimtide B 14 Synthetic construct

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NM8
Query on NM8

A 6-{5-[(Z)-(2,4-dioxo-1,3-thiazolidin-5-ylidene)methyl]furan- 2-yl}-N-{3-[(4-ethylpiperazin-1-yl)methyl]- 5-(trifluoromethyl)phenyl}naphthalene-1-carboxamide
(Z)-6-(5-((2,4-dioxothiazolidin-5-ylidene)methyl)furan- 2-yl)-N-(3-((4-ethylpiperazin-1-yl)methyl)- 5-(trifluoromethyl)phenyl)-1-naphthamide (Synonym)
C33 H29 F3 N4 O4 S
QFKROKXEJOKXGQ-MIXAMLLLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.186
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 97.84 α = 90.00
b = 97.84 β = 90.00
c = 80.43 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-21
  • Released Date: 2011-03-02
  • Deposition author(s): Filippakopoulos, P., Bullock, A.N., Fedorov, O., Miduturu, C.V., von Delft, F., Arrowsmith, C.H., Weigelt, J., Edwards, A., Bountra, C., Grey, N., Knapp, S., Structural Genomics Consortium (SGC)

Revision History

  • Version 1_0: 2011-03-02

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance