3Q7A

Cryptococcus neoformans protein farnesyltransferase in complex with FPP and L-778,123

Structural Biology Knowledgebase: 3Q7A SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3Q7A

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 100409.62

Macromolecule Entities
Molecule Chains Length Organism Details
Farnesyltransferase alpha subunit A 349 Cryptococcus neoformans Gene Name(s): CNBE3110
Farnesyltransferase beta subunit B 520 Cryptococcus neoformans Gene Name(s): CNBF2330

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
778
Query on 778

B 4-[(5-{[4-(3-CHLOROPHENYL)-3-OXOPIPERAZIN- 1-YL]METHYL}-1H-IMIDAZOL-1-YL)METHYL]BENZONITRILE
123, (Synonym)
C22 H20 Cl N5 O
JNUGFGAVPBYSHF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FPP
Query on FPP

B FARNESYL DIPHOSPHATE
C15 H28 O7 P2
VWFJDQUYCIWHTN-YFVJMOTDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SUC
Query on SUC

A, B SUCROSE
C12 H22 O11
CZMRCDWAGMRECN-UGDNZRGBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
3FX
Query on 3FX

B (2R)-3-(cyclohexylamino)-2-hydroxypropane- 1-sulfonic acid
C9 H19 N O4 S
INEWUCPYEUEQTN-SECBINFHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.185
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 142.71 α = 90.00
b = 142.71 β = 90.00
c = 130.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-01-04
  • Released Date: 2011-08-03
  • Deposition author(s): Hast, M.A., Beese, L.S.

Revision History

  • 2012-12-05
    Type: Non-polymer description | Details: --
  • 2011-10-19
    Type: Citation | Details: Citation update