3PK1

Crystal structure of Mcl-1 in complex with the BaxBH3 domain

Structural Biology Knowledgebase: 3PK1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.212

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3PK1

Classification: APOPTOSIS / APOPTOSIS REGULATOR

Total Structure Weight: 52254.63

Macromolecule Entities
Molecule Chains Length Organism Details
Induced myeloid leukemia cell differentiation protein Mcl-1 A, C 189 Homo sapiens EC#: 3.6.1.11 IUBMB
Fragment: Mcl-1 Bcl-2 like region, UNP residues 174-326
Gene Name(s): MCL1 Gene View BCL2L3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Apoptosis regulator BAX B, D 34 Homo sapiens Fragment: BH3 domain, UNP residues 48-81
Gene Name(s): BAX Gene View BCL2L4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A, B, C, D CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.49 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.212
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 97.92 α = 90.00
b = 81.47 β = 124.23
c = 57.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-11
  • Released Date: 2010-12-29
  • Deposition author(s): Czabotar, P.E., Colman, P.M.

Revision History

  • 2014-01-22
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4