3PDO

Crystal Structure of HLA-DR1 with CLIP102-120

Structural Biology Knowledgebase: 3PDO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.191

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3PDO

Classification: IMMUNE SYSTEM

Total Structure Weight: 47818.38

Macromolecule Entities
Molecule Chains Length Organism Details
HLA class II histocompatibility antigen, DR alpha chain A 193 Homo sapiens Fragment: extracellular domain
Gene Name(s): HLA-DRA Gene View HLA-DRA1
HLA class II histocompatibility antigen, DRB1-1 beta chain B 199 Homo sapiens Fragment: extracellular domain
Gene Name(s): HLA-DRB1 Gene View
HLA class II histocompatibility antigen gamma chain C 19 Homo sapiens Gene Name(s): CD74 Gene View DHLAG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMT
Query on FMT

B FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.191
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.45 α = 90.00
b = 97.63 β = 90.00
c = 99.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-23
  • Released Date: 2010-12-08
  • Deposition author(s): Gunther, S., Schlundt, A., Sticht, J., Roske, Y., Heinemann, U., Wiesmuller, K.-H., Jung, G., Falk, K., Rotzschke, O., Freund, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4