3PCD

PROTOCATECHUATE 3,4-DIOXYGENASE Y447H MUTANT

Structural Biology Knowledgebase: 3PCD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Work: 0.180

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3PCD

Classification: DIOXYGENASE

Total Structure Weight: 294866.69

Macromolecule Entities
Molecule Chains Length Organism Details
PROTOCATECHUATE 3,4-DIOXYGENASE A, B, C..., D, E, FA, B, C, D, E, F 200 Pseudomonas putida EC#: 1.13.11.3 IUBMB
Gene Name(s): pcaG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTOCATECHUATE 3,4-DIOXYGENASE M, N, O..., P, Q, RM, N, O, P, Q, R 238 Pseudomonas putida EC#: 1.13.11.3 IUBMB
Mutation: Y447H
Gene Name(s): pcaH
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BME
Query on BME

M, N, O, P, Q, R BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO3
Query on CO3

M, N, O, P, Q, R CARBONATE ION
C O3
BVKZGUZCCUSVTD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

M, N, O, P, Q, R FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Observed:
  • Space Group: I 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 197.40 α = 90.00
b = 127.20 β = 97.70
c = 134.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-11-24
  • Released Date: 1998-05-27
  • Deposition author(s): Orville, A.M., Lipscomb, J.D., Ohlendorf, D.H.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Flag nonstandard coordinate frame | Details: Tagged nonstandard coordinate frame
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4