3P5Q

Ferric R-state human aquomethemoglobin

Structural Biology Knowledgebase: 3P5Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 3P5Q

Classification: OXYGEN TRANSPORT

Total Structure Weight: 32550.26

Macromolecule Entities
Molecule Chains Length Organism Details
Hemoglobin subunit alpha A 141 Homo sapiens Gene Name(s): HBA1 Gene View HBA2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hemoglobin subunit beta B 146 Homo sapiens Gene Name(s): HBB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MBN
Query on MBN

A TOLUENE
C7 H8
YXFVVABEGXRONW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.221
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.55 α = 90.00
b = 53.55 β = 90.00
c = 192.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-10
  • Released Date: 2011-06-08
  • Deposition author(s): Yi, J., Thomas, L.M., Richter-Addo, G.B.

Revision History

  • 2011-10-26
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4