3P0G

Structure of a nanobody-stabilized active state of the beta2 adrenoceptor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.308
  • R-Value Work: 0.235

Literature

Macromolecules
Sequence Display for 3P0G

Classification: SIGNALING PROTEIN Hydrolase

Total Structure Weight: 70871.15

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-2 adrenergic receptor, Lysozyme A 501 Homo sapiens Enterobacteria phage t4 sensu lato EC#: 3.2.1.17 IUBMB
Fragment: UNP P07550 residues 1-230, 263-365, UNP P00720 residues 2-161
Mutation: G16R, E27Q, N187E, C229DT, C230UA
Details: BETA-2-ADRENERGIC RECEPTOR/T4-LYSOZYME CHIMERA
Gene Name(s): E ADRB2 Gene View ADRB2R B2AR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Camelid Antibody Fragment B 126 Lama glama Details: NANOBODY

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: β2 adrenergic receptor


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P0G
Query on P0G

A 8-[(1R)-2-{[1,1-dimethyl-2-(2-methylphenyl)ethyl]amino}- 1-hydroxyethyl]-5-hydroxy-2H-1,4-benzoxazin- 3(4H)-one
C21 H26 N2 O4
NWQXBEWHTDRJIP-KRWDZBQOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
P0G N/A in BindingDB
N/A in BindingMoad
Kd: 0.084 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.308
  • R-Value Work: 0.235
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 236.69 α = 90.00
b = 45.66 β = 102.34
c = 71.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-28
  • Released Date: 2011-01-19
  • Deposition author(s): Rasmussen, S.G.F., Choi, H.-J., Fung, J.J., Pardon, E., Casarosa, P., Chae, P.S., DeVree, B.T., Rosenbaum, D.M., Thian, F.S., Kobilka, T.S., Schnapp, A., Konetzki, I., Sunahara, R.K., Gellman, S.H., Pautsch, A., Steyaert, J., Weis, W.I., Kobilka, B.K.

Revision History

  • Version 1_0: 2011-01-19

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-08-23

    Type: Source and taxonomy