3OSX

Crystal Structure of Apical Domain of Insecticidal GroEL from Xenorhapdus nematophila

PDB DOI: https://doi.org/10.2210/pdb3OSX/pdb

Classification: CHAPERONE
Organism(s): Xenorhabdus nematophila
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-09-10 Released: 2011-10-05
Deposition Author(s): Viswanathan, R., Arockiasamy, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free: 0.210
R-Value Work: 0.148
R-Value Observed: 0.205

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Apical Domain of Insecticidal GroEL from Xenorhapdus nematophila

Viswanathan, R., Krishnadas, B., Shashi, K., Iyer, L.M., Aravind, L., Nirupama, B., Arockiasamy, A.

To be published.

Macromolecule Content

Total Structure Weight: 22.01 kDa
Atom Count: 1,748
Modelled Residue Count: 190
Deposited Residue Count: 201
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
60 kDa chaperonin	A	201	Xenorhabdus nematophila	Mutation(s): 0 Gene Names: groEL, groL
UniProt
Find proteins for Q6Y3X3 (Xenorhabdus nematophila) Explore Q6Y3X3 Go to UniProtKB: Q6Y3X3
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q6Y3X3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free: 0.210
R-Value Work: 0.148
R-Value Observed: 0.205
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.983	α = 90
b = 61.882	β = 90
c = 75.332	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345dtb	data collection
DENZO	data reduction
SCALEPACK	data scaling
Auto-Rickshaw	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-10-05

Deposition Author(s):

Viswanathan, R.

Arockiasamy, A.

Revision History (Full details and data files)

Version 1.0: 2011-10-05
Type: Initial release
Version 1.1: 2023-11-01
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.