3OJ4

Crystal structure of the A20 ZnF4, ubiquitin and UbcH5A complex

Structural Biology Knowledgebase: 3OJ4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.319
  • R-Value Work: 0.280

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3OJ4

Classification: LIGASE / PROTEIN BINDING

Total Structure Weight: 63241.18

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-conjugating enzyme E2 D1 A, D 153 Homo sapiens EC#: 2.3.2.23 IUBMB
Fragment: Ubiquitin-conjugating enzyme E2 D1
Gene Name(s): UBE2D1 Gene View SFT UBC5A UBCH5 UBCH5A
Ubiquitin B, E 79 Homo sapiens Fragment: Ubiquitin, UNP residues 1-76
Gene Name(s): UBC Gene View
Tumor necrosis factor alpha-induced protein 3 C, F 49 Homo sapiens EC#: 3.4.19.12 IUBMB 6.3.2 IUBMB
Fragment: Zinc finger A20-type 4, UNP residues 592-635
Gene Name(s): TNFAIP3 Gene View OTUD7C

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

C, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.319
  • R-Value Work: 0.280
  • Space Group: P 3 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 102.65 α = 90.00
b = 102.65 β = 90.00
c = 112.69 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-20
  • Released Date: 2010-12-08
  • Deposition author(s): Bosanac, I, Hymowitz, S.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4