3OFG

Structured Domain of Caenorhabditis elegans BMY-1

• PDB DOI: https://doi.org/10.2210/pdb3OFG/pdb

• Classification: CHAPERONE
• Organism(s): Caenorhabditis elegans
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2010-08-14 Released: 2011-03-02 
• Deposition Author(s): Collins, M.N., Hendrickson, W.A.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.37 Å
• R-Value Free: 0.168 
• R-Value Work: 0.146 
• R-Value Observed: 0.147 

Literature

Structural Characterization of the Boca/Mesd Maturation Factors for LDL-Receptor-Type beta-Propeller Domains

Collins, M.N., Hendrickson, W.A.

(2011) Structure 

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 22.45 kDa 
• Atom Count: 1,832 
• Modelled Residue Count: 178 
• Deposited Residue Count: 190 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Boca/mesd chaperone for ywtd beta-propeller-egf protein 1	A, B	95	Caenorhabditis elegans	Mutation(s): 0  Gene Names: bmy-1, F09E5.17
UniProt
Find proteins for Q8IG33 (Caenorhabditis elegans) Explore Q8IG33  Go to UniProtKB:  Q8IG33

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CL	C [auth A], D [auth A], E [auth A], F [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.37 Å
• R-Value Free: 0.168 
• R-Value Work: 0.146 
• R-Value Observed: 0.147 
• Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 29.522	α = 63.39
b = 38.148	β = 85.74
c = 40.706	γ = 84.69

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction
MAR345	data collection

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-03-02 
Deposition Author(s): Collins, M.N., Hendrickson, W.A.

Revision History  

• Version 1.0: 2011-03-02
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-08
  Changes: Refinement description